Protein Info for DDA3937_RS03380 in Dickeya dadantii 3937

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1026 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 387 to 410 (24 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 463 to 486 (24 residues), see Phobius details amino acids 529 to 548 (20 residues), see Phobius details amino acids 854 to 872 (19 residues), see Phobius details amino acids 879 to 899 (21 residues), see Phobius details amino acids 905 to 930 (26 residues), see Phobius details amino acids 954 to 975 (22 residues), see Phobius details amino acids 985 to 1009 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1010 (1007 residues), 981.7 bits, see alignment E=4e-299 PF03176: MMPL" amino acids 200 to 491 (292 residues), 37.4 bits, see alignment E=1.5e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_02281)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SLS1 at UniProt or InterPro

Protein Sequence (1026 amino acids)

>DDA3937_RS03380 efflux RND transporter permease subunit (Dickeya dadantii 3937)
MKLAELCLSRPIAVMLLWLSVIVTGVICWTKLPVAALPSFDMPTIRVSASLSGASPETMA
SSVATPLEKNLSTIPGLSMLTSTSLQGATTIVLEFDPSVNIDAAAVDVQSALYQTMKKLP
SQMTTPPSFRKVNPADAPIVAIGIDSPSMTLSDLNRFTDNLISPALSTIKGVAEVNVIGQ
KRYAVRVEIDPDRLAATDMTLSEVQTALKAANANSPIGELDGKRQMMMLQTSGDLMKAAD
FANVIIATRNGQPVRLSDVASVQDSIENALSYSAVNGHTAIVLSINRQPGANIVATLDAI
NRLLPTLQAQMPPSVQVKLLNDRSLSIRQAIHDVNITLMLTIALVVLVILLFLRHFRATL
IPALSVPVSLLGAFALMYLLGMSLDNISLMGLTIAVGLVVDDAIVVLENIMRYMEEGESP
WRAALLGVREVAFTVVSISLSLVAVFIPIFFMPGTLGLLFHEFAWVVSLAILVSAAASLT
VIPLLVPMLIKHQAHPAPEPAWSQLFERGFESLRRGYGHALDWAIGHRWVMVSTALVTVL
LSVLLYWSAPKGFFPQEDLGQVTANIDTPQDMSYEGRLKVAQQLGNTLLQDPAVSDMVTK
VDHDTTQLMLTLKGSAQRPPMAQVLQIMRAETRYLPGITVFYSPVQNLKVGGRSSKSNYQ
YTLQSVNSGDGLSLNDWANKLMDGMKKTGVFVGVNSDAQLNGLQAQLQIDRNKASLMGVD
IDQIRSNLYAAFGTQQASTIYAPEDSYQVIMEVDSAFRQNESDLSKIYVRSSANTLLPVT
TFTHITRAQGVTAVNHQGQLPAITVSFDLAPGKSLSDATNAIAQVQQAIQMPNSVIGSYA
GQAALYQQSQTSQIWLIVMALAVIYVILGVLYESWIHPLTILLGLPSAAVGALLALRLLN
LDLTFIAMIGILLLIGIVKKNAIMMIDFALAAQRTQGMSPHDAIVQACMQRFRPIMMTTL
CAMMGALPIAFGWGAGAELRQPMGVAVVGGLLFSQLITLFITPVLYLLFDRPEVGMTTMV
HRVEEQ