Protein Info for DDA3937_RS02845 in Dickeya dadantii 3937

Annotation: TerC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 41 to 63 (23 residues), see Phobius details amino acids 83 to 106 (24 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 199 to 223 (25 residues), see Phobius details amino acids 226 to 228 (3 residues), see Phobius details amino acids 235 to 255 (21 residues), see Phobius details amino acids 266 to 284 (19 residues), see Phobius details amino acids 290 to 311 (22 residues), see Phobius details TIGR03718: integral membrane protein, TerC family" amino acids 7 to 313 (307 residues), 399.4 bits, see alignment E=5.9e-124 PF03741: TerC" amino acids 80 to 282 (203 residues), 180.7 bits, see alignment E=1.2e-57

Best Hits

Swiss-Prot: 75% identical to ALX_ECOL6: Putative membrane-bound redox modulator Alx (alx) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_02743)

Predicted SEED Role

"Integral membrane protein TerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SKT8 at UniProt or InterPro

Protein Sequence (317 amino acids)

>DDA3937_RS02845 TerC family protein (Dickeya dadantii 3937)
MVTIGTPLMWGSFAIIVVVMLAIDLFYQGKKGSTVMTFKQAAVWSMIWVTLSILFNAGFW
WYLTGIAGREVADAQALAFFTGYLIEKALAVDNVFVWLMLFSYFAIPAQYQRRVLIYGVL
GAIVLRTIMVFAGSWLVSQFQWLLYLFGAFLLLTGLKMALAKADDTAIGDKPVVRWLRSH
LRMTDNLQGEHFFIRQNGLLYATPLFLVLVMVEISDVIFAVDSIPAIFAVTTDPFIVLTS
NLFAILGLRAMYFLLAGVAQKFSMLKYGLAVILIFIGIKMMLIDLFHIPVAISLSVVAAI
LLVTILINIWVNRRAGR