Protein Info for DDA3937_RS02785 in Dickeya dadantii 3937

Annotation: DoxX family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 45 to 67 (23 residues), see Phobius details amino acids 72 to 92 (21 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details PF07681: DoxX" amino acids 9 to 88 (80 residues), 68.8 bits, see alignment E=2.6e-23

Best Hits

Swiss-Prot: 70% identical to YQJF_ECOLI: Inner membrane protein YqjF (yqjF) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_02731)

Predicted SEED Role

"Inner membrane protein YqjF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SK43 at UniProt or InterPro

Protein Sequence (131 amino acids)

>DDA3937_RS02785 DoxX family protein (Dickeya dadantii 3937)
MKNFENALLMVARILLPILFIVAGYGKLGASYAATQQYMQAMGVPGALLPLTILLELGGG
LAVLFGFMTRTAAIATAIFTLLTAFIFHTDFAQGANQLMFMKNLSIAGGYVLLFVTGPGA
FSIDRLLNKKW