Protein Info for DDA3937_RS02655 in Dickeya dadantii 3937

Annotation: RNA-directed DNA polymerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 680 transmembrane" amino acids 454 to 472 (19 residues), see Phobius details amino acids 566 to 583 (18 residues), see Phobius details PF00078: RVT_1" amino acids 204 to 355 (152 residues), 39.9 bits, see alignment E=1.9e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_02706)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SK18 at UniProt or InterPro

Protein Sequence (680 amino acids)

>DDA3937_RS02655 RNA-directed DNA polymerase (Dickeya dadantii 3937)
MSKKALSINFPIERVVLSDFLPYEVPITFSNRHFYNFIIEHKLRHDGLNFRWLKGDDSLK
KLVLLLLGLEQATKTVDVDEDGVSYTETKISHTNLPSIAFTFPISHKHKEYRYLSLMHPK
GQLLGVDFYRNYKDLITYYSDLSPLSLRAAKKVAGCTFIDKKSLIESFDHEDLSIELEGQ
NYENLKSFFVYKKYSNIFEFYESEDHHWCEKRFNYLSKLDVSNCFDSIYTHSISWAVLQK
DYAKKQLSKTKTTFPFKFDQLMQRSNYNETNGIIIGPELSRIFAEIIMQSIDNSIIKDLN
QENLVLSVDYQIYRYVDDYFIFYNDDDVFNKIKISAQTNLKTYKLNLNKYKEVTYSRPII
TPITIAKKKIAALISEKISYNFKSDDDSDAEFKKGNVYIHQNSLSTDFKSILSVSGVTYS
DILNYSLAIIERKIKNLFRDYKELSINKDHDRQLINAVVSVINFTYFIYAVAPKVNSTIK
LCRIVQQIIMFIKDEKLGAEYQHVVFKCIFDNSCSILDKYSIDRTTPIETLYLLVLIRQL
GKYYWLSESSLIKYFNIKRDSDSYTFDGNLSYFSITSLLFYISNKKRYDIIKQHLLLFIE
KIYTMKVDTLLNESELVHLTLDLIACPYIPISFKRSLLSYYDIDKSYAKRIISLNQYWFT
KWDDFNFAKELDAKLSNAVY