Protein Info for DDA3937_RS02580 in Dickeya dadantii 3937

Annotation: polysaccharide biosynthesis tyrosine autokinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 710 transmembrane" amino acids 29 to 50 (22 residues), see Phobius details amino acids 425 to 449 (25 residues), see Phobius details PF02706: Wzz" amino acids 15 to 105 (91 residues), 33.3 bits, see alignment E=5.1e-12 PF13807: GNVR" amino acids 375 to 447 (73 residues), 30 bits, see alignment E=4.1e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_02643)

Predicted SEED Role

"Capsular polysaccharide synthesis enzyme CpsD, exopolysaccharide synthesis"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SK01 at UniProt or InterPro

Protein Sequence (710 amino acids)

>DDA3937_RS02580 polysaccharide biosynthesis tyrosine autokinase (Dickeya dadantii 3937)
MSLSIVENGRKLESTIDFSRFAQEIKQNGWKIMLAGLIVAVVAYPLISMITPKYVSTATV
LLKAQQDNVSPLPQVDGYDSTRSGYYETQYALMQSRIVLEQAVRDIKLDQNPAFNGDTDK
NADNRGDEQQRVDRALDTIVKNLTITGVRTTHLATISYESASPELAADIANGAAQAFIDY
TARQKHLKTLKAKALNQKQMEEVWQQVVEQQTAIDQFLKKEGLLTFRGVGGFETEQLGIV
TTKLADATQRRIRAETNYNSVRLNAGTSLENIISLPDISNHAQIQDLRIALIQARRSLYD
LRKRYGLKHTKILEAEAQVQAIEEQTHTVLLELEAGLNKQYQAALRDEKYYQQLLEQQKA
DFQTLASKRDEYNNLTTALDKTKELYKALYQRTKEQTLAGNYLEPDAILYDPAVPADHPS
KPNKAMLLVMVVMLTLIFSVVYFIVKAALDNSINSLSQMKKRLNVAPVGEIRTFASGAKR
SQVVRLITKTPLDVDIVHSMRTHILLSHPSCQAIAISSAEHGEGRSLLAHLLATSFSADQ
KTLLIDLDFFNDDGLTQDLAYPSAIGVAELLQGQSSLDAALVTISDNLSFLPRGNASMSS
LLMLSSEHVVTLMAELRTRYQRIIVDVAAVNQTQDSQLISRVIDGVVFVLKAGEWRAGDV
LNAIEKVKHHRAVLIGAVMNQVADKNLETKEGIRSLNHRMNALINSTGHL