Protein Info for DDA3937_RS02190 in Dickeya dadantii 3937

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 355 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 41 to 62 (22 residues), see Phobius details amino acids 70 to 92 (23 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 127 to 148 (22 residues), see Phobius details amino acids 168 to 196 (29 residues), see Phobius details amino acids 228 to 247 (20 residues), see Phobius details amino acids 259 to 277 (19 residues), see Phobius details amino acids 283 to 302 (20 residues), see Phobius details amino acids 307 to 326 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 46 to 320 (275 residues), 138.9 bits, see alignment E=9.1e-45

Best Hits

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 100% identity to ddd:Dda3937_01339)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SJ29 at UniProt or InterPro

Protein Sequence (355 amino acids)

>DDA3937_RS02190 ABC transporter permease (Dickeya dadantii 3937)
MSQKYTLYMYLLKARTFIALLIVVVFFSLMVPNFLTPSNLLIMTQHVAITGLLAIGMTLV
ILTGGIDLSVGAVAGICGMVAGALLTNGIPLWGGNVLFLNVPEVILTVAVLGMAIGLVNG
VVITRLVVAPFICTLGMMYVARGVALLFNDGSTYANLNGMPALGNTGFAFLGSGTLLGIY
LPIWLMLAFLLLGLYLTRKTPLGRYIYAIGGNESAARLAGVPIVNVKIFVYAFSGLCAAL
VGLVVASQLQTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVSGSIIGAFVIVFLADGMV
MMGVSDFWQMVIKGVVIVTAVVIDQFQQRLQNKVVTMRRHEKKQAVNPLSEVSHV