Protein Info for DDA3937_RS02115 in Dickeya dadantii 3937

Annotation: amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 37 to 62 (26 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 114 to 138 (25 residues), see Phobius details amino acids 149 to 173 (25 residues), see Phobius details amino acids 185 to 206 (22 residues), see Phobius details PF01810: LysE" amino acids 16 to 202 (187 residues), 136.2 bits, see alignment E=5.2e-44

Best Hits

Swiss-Prot: 40% identical to ARGO_YERE8: Arginine exporter protein ArgO (argO) from Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)

KEGG orthology group: K06895, L-lysine exporter family protein LysE/ArgO (inferred from 100% identity to ddd:Dda3937_01323)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SJ13 at UniProt or InterPro

Protein Sequence (208 amino acids)

>DDA3937_RS02115 amino acid transporter (Dickeya dadantii 3937)
MPLPIFITGFMTSAGLIAAIGAQNSFVLRQGMRREHVFWVSSVCFLCDMALMTLGVLGLG
KIINDSKPAITTLTLAGVLFLLWYGYNALKSAWRGNNQLTLTTQGDGLRRRRTVIGACLA
VSLLNPHVYLDTVAIIGGISSGIAPDLKLFYLAGSISASFIWFYTIGYTAAACSRYFANP
LTWRVIDTLIGGYMIFMAFQLCRFLYQV