Protein Info for DDA3937_RS02020 in Dickeya dadantii 3937

Annotation: DEAD/DEAH box helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 852 PF00270: DEAD" amino acids 148 to 288 (141 residues), 61.6 bits, see alignment E=1.2e-20 PF04851: ResIII" amino acids 152 to 265 (114 residues), 28.1 bits, see alignment E=2.8e-10 PF00271: Helicase_C" amino acids 437 to 513 (77 residues), 31.7 bits, see alignment E=2.5e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_01302)

Predicted SEED Role

"DEAD/DEAH box helicase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SIB1 at UniProt or InterPro

Protein Sequence (852 amino acids)

>DDA3937_RS02020 DEAD/DEAH box helicase (Dickeya dadantii 3937)
MSTLAHEIISQIRNKFEFKSDLGFLFSHSFLKKNDKNIFVNRHSEEDNAPTEIFKRLIES
AYLFSQSESDEDKNLAQSIAYHLNTITDDDFLKKMSENLLRILGNLPGANYLQKENRDLP
ESFYSYFKRRFIEKENTIKISNKELILTDFQKKVWDSLHTNKSQAISAPTSAGKSFLVVE
MIINKIISGEINFVVYVAPTRALVNEITEKFINKTLEYHNKIRVTSIPTVNDGFHKQIFV
LTQERLQVLLDHQYHKIDMVVIDEAQSISDEIRGMILQDGLDRISVQNPHAKYVFIAPGA
VGFDDLADIIGIDKLHIEKTNYSPVVQNKIIVKVDPAKENNLKLSLLDNSNILPIGEITS
KRGFANENTRLAAVALELGKNEGSLVYGTGAADAEDVAKQISSGLLPIKNDNDLQELSKF
IKKHVHKDYSLANHVLRGVGYHYGKMPSLLRETLEKNFIKNKLKFLVCTTTLFQGVNLPA
KNVFIDTPTRGNRGEKLDPASLWNFAGRAGRLGYSFSGNVYLIDYDDWETKPLDSKIDFQ
ITSSFKKVVTDDFDKILERLNKDNHSGVSQYTNVDAAVGLLISRAAKGDLHNFLTRSFRS
ITEKSKINSIEIATRNSLESITIPHNILSLNWTVDPFGQERLYNRFIQKIKEGKADELIP
RHPSGDVYANYVGVFSRINKYIINNNTAKFSNYLTSMALNWMRGKSLPEIIDLSIKKKKE
KGGNKPVNVDRTVREVFDFIEDNLRFKYVQLGKAYVDLLRQALVDNNLSHKSEEIYDFPL
SLELGVASIAGQAFIELGLSRISASYLENIIPNSNPTINMAKDWLKNNDYETLDLPLTIF
RELEDKGLLNSD