Protein Info for DDA3937_RS01930 in Dickeya dadantii 3937

Annotation: YhcH/YjgK/YiaL family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 TIGR00022: YhcH/YjgK/YiaL family protein" amino acids 1 to 153 (153 residues), 174.8 bits, see alignment E=5.2e-56 PF04074: DUF386" amino acids 1 to 149 (149 residues), 152.8 bits, see alignment E=3.5e-49

Best Hits

Swiss-Prot: 71% identical to TABA_SHIFL: Toxin-antitoxin biofilm protein TabA homolog (tabA) from Shigella flexneri

KEGG orthology group: None (inferred from 100% identity to dze:Dd1591_3734)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SI92 at UniProt or InterPro

Protein Sequence (155 amino acids)

>DDA3937_RS01930 YhcH/YjgK/YiaL family protein (Dickeya dadantii 3937)
MIIGNVDHLELVPYLPAKLREAIEYVKQHINADTPLGKHDIDGNKVFVLVSNDSTEPFEK
RRAEYHAKYLDIQIVLNGTEGMTFSNLPAGKPDVDWLADKDIAFLPAGEQEKQVILQTGD
FVVFFPGEVHKPLCAVGEPAHVRKAVVKIDATLVL