Protein Info for DDA3937_RS01830 in Dickeya dadantii 3937

Annotation: Qnr family pentapeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 216 PF13599: Pentapeptide_4" amino acids 18 to 101 (84 residues), 38 bits, see alignment E=2.4e-13 amino acids 95 to 164 (70 residues), 32.3 bits, see alignment E=1.5e-11 PF00805: Pentapeptide" amino acids 22 to 46 (25 residues), 17.9 bits, see alignment (E = 2.7e-07) amino acids 55 to 90 (36 residues), 22.9 bits, see alignment 7.7e-09 amino acids 95 to 132 (38 residues), 20.5 bits, see alignment 4.3e-08 amino acids 120 to 159 (40 residues), 28 bits, see alignment 2e-10

Best Hits

Swiss-Prot: 68% identical to QNRB4_ECOLX: Pentapeptide repeat protein QnrB4 (qnrB4) from Escherichia coli

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_01264)

Predicted SEED Role

"Qnr"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SI69 at UniProt or InterPro

Protein Sequence (216 amino acids)

>DDA3937_RS01830 Qnr family pentapeptide repeat protein (Dickeya dadantii 3937)
MNAQTFTEQKFSADRFTQQLVENCKFHNCDFAGCDLTDTQFLNCQFFDQESQMGCNFYRA
TLKDASFKNCDLSLCNFRSVKALGIEIRDCRAQGADFRDASFMNRITARTWFCSAYITKS
NLSYANLSGVILEKCELWENRWTGANVNGASFVGSDLSGGEFNAFDWRSADVTQCDLINA
ELGELDVRSTNLEGVKLDSHQINTLMERLGIIVIEQ