Protein Info for DDA3937_RS01515 in Dickeya dadantii 3937

Annotation: RNase adapter RapZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 PF03668: ATP_bind_2" amino acids 1 to 282 (282 residues), 477.5 bits, see alignment E=6.8e-148

Best Hits

Swiss-Prot: 95% identical to RAPZ_ERWT9: RNase adapter protein RapZ (rapZ) from Erwinia tasmaniensis (strain DSM 17950 / CIP 109463 / Et1/99)

KEGG orthology group: K06958, UPF0042 nucleotide-binding protein (inferred from 100% identity to ddc:Dd586_0282)

Predicted SEED Role

"Hypothetical ATP-binding protein UPF0042, contains P-loop"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SHC0 at UniProt or InterPro

Protein Sequence (284 amino acids)

>DDA3937_RS01515 RNase adapter RapZ (Dickeya dadantii 3937)
MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPELAHTLAERNISAAVSIDVRNL
PETPEVLEHALTRLPQSFSPQLLFLDADRNTLIRRYSDTRRLHPLSSKNLSLESAIDEEN
DLLEPLRSRADLIIDTSEMSVHELAEMLRTRLLGKRERELTMVFESFGYKHGIPIDADYV
FDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNFIYQTRSYLELWLPMLETNNRSY
LTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKRKS