Protein Info for DDA3937_RS01470 in Dickeya dadantii 3937

Annotation: AaeX family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 67 transmembrane" amino acids 6 to 32 (27 residues), see Phobius details amino acids 44 to 63 (20 residues), see Phobius details PF07869: DUF1656" amino acids 7 to 61 (55 residues), 62.2 bits, see alignment E=1.9e-21

Best Hits

Swiss-Prot: 79% identical to AAEX_DICP7: Protein AaeX (aaeX) from Dickeya paradisiaca (strain Ech703)

KEGG orthology group: None (inferred from 94% identity to ddc:Dd586_0273)

Predicted SEED Role

"probable membrane protein YPO3684"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SHB1 at UniProt or InterPro

Protein Sequence (67 amino acids)

>DDA3937_RS01470 AaeX family protein (Dickeya dadantii 3937)
MNSLPVMVLFGLSFPPVFFVLLITLALFFICIRLLHPTGIYDRVWHPALFNTALFVCLFY
LLFRFGL