Protein Info for DDA3937_RS01455 in Dickeya dadantii 3937

Annotation: AsmA2 domain-containing protein YhdP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1278 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 1216 to 1238 (23 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 2 to 1268 (1267 residues), 1359.2 bits, see alignment E=0 PF13116: DUF3971" amino acids 505 to 786 (282 residues), 320.3 bits, see alignment E=1.4e-99 PF13502: AsmA_2" amino acids 1017 to 1259 (243 residues), 229.6 bits, see alignment E=4.2e-72

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_00667)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SHA8 at UniProt or InterPro

Protein Sequence (1278 amino acids)

>DDA3937_RS01455 AsmA2 domain-containing protein YhdP (Dickeya dadantii 3937)
MKRLPGIAAATGAILIVLAALLVSGLRMVLPTLDTFRPQVVAWAQSVTGLPMEVESLSGS
WETFGPTLDITNLRIHHPDAEWQSERISVALDVWQSLLHLKWKFRDLTFYHLQVDIKTPI
DPDRQRSRTWEPDQLGSLFLRQFDHFDLRNSRIRFLTPAGTQAELQIPQLTWLNGKNRHR
AEGQISLSSFNGQHGVVQLRMDLRDEQGWLNNGVVYLQADNIDMKPWLGRWIRNNTGLES
ANFSLAAWLQVREGDMYGGDLLLSQGDASWRDGDTLHRLGINGMTLHASRYQNGWQLDVP
ALNLSTDGVDWPKGQLSALWLPADTQLLGPDRLAELRIRGRHLALERLGPLLPLLSTATP
ELKTRWQALQPQGQLTALALDIPLQQPEQTRFQANWQDVGWKNWQLLPGANHVSGEAAGS
LARGRVRVNLAQSTLPYQDMFRAPLDIRQADATLDWRSDSQGWELWGQGLDVRSRSLWAN
GDFRYRHPAQGEPRLDILAGIRLGDAADAWRYYPEPFMGKDLVNYLTGAIKSGQVDNATL
VFAGNPAQFPFEHQEGQFQVWVPLEKSRFEFQPGWPALDNLNISLNFLNNGLWMSAPHVM
LGDAEGRNVNAVIPDYSKETLLIDGDISGSGKEVSDYFDQTPLKISLGGALTQIQIGGEV
QGNLHLDIPLNGGLVKASGDVALNNNHLFIKPLDVSLQSVSGAFHYDNGNLSSQTLQGRW
LEQPLTFNFSTQEQEKAFLVNVGLQGNWAASRLPELPKPVAAALNGNANWQSTVQVTLPH
QGPSSYDVTVQGDLKEVSSHLPSPLNKAGGAALGLQVSAKGDERGFSLTGSLGKSQSFNS
QWLLKDNKVMLTRAAWQEGAKPPPLPDDSSLTLALPPLDGERWLALLPGVRNAVSAQAGA
SRFQWPDRVTLTTPELKILGQQWHDLMFTSRSQNGGSEITAAGREIDGRLLIPTSGLWRG
DVRYLYYNPQWQGDDATNPAALAEKKSPLNDPSIRFEDWPALQFDCRECWLMGQNVGQVK
GTLQPEPNKLVLANGLVDNGKAKLTLDGSWQESGEGTRTAIKGQLSGGSLSDNADWLGLA
TPLRAGAFKIDYDLYWHGSPWAPHIPSLSGILKTDIGKGEIVNVGTGQAGQLLRLVSFDA
LLRKLQFDFSDTFGKGFYFDSVRSTAWIKDGVLHTDNLLVDGLEADIAMKGDIDLVKREL
SMEAVVAPEISATVGVATAFAVNPVIGAAVFAASKVLAPLWSKISLIRYHISGSVDQPKI
QEVVREPQKAKAAEAAGQ