Protein Info for DDA3937_RS01365 in Dickeya dadantii 3937

Annotation: phage tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 942 transmembrane" amino acids 186 to 212 (27 residues), see Phobius details PF06791: TMP_2" amino acids 127 to 330 (204 residues), 225.2 bits, see alignment E=7.3e-71 TIGR01541: phage tail tape measure protein, lambda family" amino acids 547 to 897 (351 residues), 200.1 bits, see alignment E=2.6e-63 PF09718: Tape_meas_lam_C" amino acids 702 to 776 (75 residues), 81 bits, see alignment E=5.5e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_01594)

Predicted SEED Role

"Phage tail length tape-measure protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SH89 at UniProt or InterPro

Protein Sequence (942 amino acids)

>DDA3937_RS01365 phage tail tape measure protein (Dickeya dadantii 3937)
MTQQVGNLIVNLEADSASFTEQVERAKKQLGTFGDSANSAAQTTADMAARQEAALKSLLE
QIDPNVKAINRLDVQYAQLVSHLDAGRIDAGQFERFNGMLSQSRQQILKMTAAANDLPAA
LSKQELAAQKAGISIGQYRMAMRSLPAQMTDVVTQLAGGQNPFLIMIQQGGQVKDMFGGF
RPMFTGLASAISPTFLAIGATAGAVTALGIAAYKGQQYLSDFNKSLVLTGGQSGQTANSL
LFNAEAIANSGRSFGGAAESLNALVKAGANLGVNYKDVAASIASLSKTAGASVDDLAGTF
GKITMDPEKGLAAMAEKYGNVTLRQLDYIKSLQDSGKYTEALSYANKIASDGFQEMARSV
QDNMGYLERAAASVGGAFSSMWDKMLDVGKSKSLQAQLADATEQFYNLDKSLKASSAQGQ
QRMGLEQAREQARQLVAQLTDQLHAEQRKGDEQQRQATLQKSALTNQQHFQALADAGLTK
EQQRTDEYLRLNRYIEERKKLNQALSQEEIAQIKKGIEERYKDPKQREYKAPAGDTEQEK
ALAELTALESQLRVLQQHSSLNDTISQQRKDLWLTESKFAVLDDASQNRKLTKQEQSLLA
NKDQIVALAQQKALLGDEIVAQERLNKLNDTALKYATQMSEKGAALTAGSTISDRLAQQQ
RAMAQLRIGWQNAGGQLSDAGYQKELEAAQAYYAKEDALRNDWLAGAKRGWAEFEDSATN
VYSSVQESATSALNGLSDSLTSLVTTGSANIKQFGTSMLKMIASVINKLIVTYALQQALG
WISASASASTSTATASASANSSFSGGAYSNLGFADGGYANLGGFTGIGNKHEPAGIVHRG
EFVFTKEATRRIGVGNLYNMMHGFADGGFAGGVAPNTPLASGGGLQITNNVTIQNDGSVS
SSTSGNDQVSKATLRLLDDFCQKNIVKALTPGGSIWNAMKSR