Protein Info for DDA3937_RS00735 in Dickeya dadantii 3937

Annotation: sn-glycerol-3-phosphate import ATP-binding protein UgpC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 PF00005: ABC_tran" amino acids 21 to 162 (142 residues), 117.2 bits, see alignment E=1.3e-37 PF17912: OB_MalK" amino acids 236 to 285 (50 residues), 48 bits, see alignment 2.9e-16 PF08402: TOBE_2" amino acids 278 to 348 (71 residues), 40.6 bits, see alignment E=3.3e-14

Best Hits

Swiss-Prot: 84% identical to UGPC_PECAS: sn-glycerol-3-phosphate import ATP-binding protein UgpC (ugpC) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K05816, sn-glycerol 3-phosphate transport system ATP-binding protein [EC: 3.6.3.20] (inferred from 100% identity to ddd:Dda3937_03044)

MetaCyc: 73% identical to sn-glycerol 3-phosphate ABC transporter ATP binding subunit (Escherichia coli K-12 substr. MG1655)
ABC-34-RXN [EC: 7.6.2.10]; 7.6.2.10 [EC: 7.6.2.10]

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.20 or 7.6.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SFJ9 at UniProt or InterPro

Protein Sequence (358 amino acids)

>DDA3937_RS00735 sn-glycerol-3-phosphate import ATP-binding protein UgpC (Dickeya dadantii 3937)
MACLKLQAVTKSYDGKTQVIQPIDLDVADGEFVVMVGPSGCGKSTLLRMVAGLEQTTSGD
IYIGDERVTDKEPKDRGIAMVFQNYALYPHMSVYDNMAYGLKIRGFGKAQIRQRVEEAAR
ILELQPLLHRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLELQQL
HKRLKTTSLYVTHDQVEAMTLAHRVIVMNKGVAEQIGAPAEIYRKPASLFVASFIGSPAM
NLWAGQVSMDGSRVALSADFSLPLPVAKPEWQGRAVTLGMRPEHILQSTADAGGVPLVVE
TLELLGADNLAHGKWAGQNIVVRLSHEHCPAVGETLWLTLPAASWHIFDSQSGLRMEA