Protein Info for DDA3937_RS00635 in Dickeya dadantii 3937

Annotation: signal recognition particle-docking protein FtsY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 PF02881: SRP54_N" amino acids 159 to 224 (66 residues), 59.4 bits, see alignment E=5.1e-20 TIGR00064: signal recognition particle-docking protein FtsY" amino acids 171 to 442 (272 residues), 378.3 bits, see alignment E=1e-117 PF06414: Zeta_toxin" amino acids 238 to 348 (111 residues), 34.4 bits, see alignment E=2.3e-12 PF00448: SRP54" amino acids 242 to 442 (201 residues), 262.4 bits, see alignment E=3.5e-82

Best Hits

Swiss-Prot: 70% identical to FTSY_ECOLI: Signal recognition particle receptor FtsY (ftsY) from Escherichia coli (strain K12)

KEGG orthology group: K03110, fused signal recognition particle receptor (inferred from 100% identity to ddd:Dda3937_02012)

Predicted SEED Role

"Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)" in subsystem Bacterial Cell Division or Two cell division clusters relating to chromosome partitioning or Universal GTPases (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SFH9 at UniProt or InterPro

Protein Sequence (446 amino acids)

>DDA3937_RS00635 signal recognition particle-docking protein FtsY (Dickeya dadantii 3937)
MAKEKKRGFFSWLGLGRQDEDKTEQPQPAPEAPQADDATPAAPEPAQNTSDEAPEQPAPN
NTALAETGETPAPESQPTETAAEIPPTPVEPPETVALVAEPTADAEPQTDTVAEDGVEPE
PETVIVPAAPVVSQEQERPTKEGFFARLKRSLVKTRQNLGSGFVGLFRGKKIDDDLFDEL
EEQLLIADVGVETTRKIIDRLTEHASRKQLKDAEALIALLKAEMSDILAKVDAPLDIDSK
TPFVILMVGVNGVGKTTTIGKLARQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPV
VAQHTGADSASVIFDALQAARARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENA
PHEVMLTLDASTGQNAVSQAKLFNETVGLSGITLTKLDGTAKGGVIFAIADQFGIPIRYI
GVGESIDDLRPFKADDFIEALFARED