Protein Info for DDA3937_RS00595 in Dickeya dadantii 3937

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 21 to 45 (25 residues), see Phobius details amino acids 53 to 71 (19 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 117 to 146 (30 residues), see Phobius details amino acids 158 to 180 (23 residues), see Phobius details amino acids 186 to 205 (20 residues), see Phobius details amino acids 226 to 252 (27 residues), see Phobius details amino acids 258 to 277 (20 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 317 to 336 (20 residues), see Phobius details amino acids 348 to 372 (25 residues), see Phobius details amino acids 378 to 397 (20 residues), see Phobius details PF07690: MFS_1" amino acids 31 to 285 (255 residues), 68.5 bits, see alignment E=2.6e-23 amino acids 235 to 398 (164 residues), 41.5 bits, see alignment E=4.3e-15

Best Hits

Swiss-Prot: 71% identical to YHHS_ECOLI: Uncharacterized MFS-type transporter YhhS (yhhS) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_02004)

Predicted SEED Role

"Transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SFH1 at UniProt or InterPro

Protein Sequence (407 amino acids)

>DDA3937_RS00595 MFS transporter (Dickeya dadantii 3937)
MPVSTPPVSTPPKPSPGGLRLNLRIMSVVMFNFASYLNIGLPLAVLPGYVHEHLGFSAFW
AGLVISLQYFSTLLSRPRAGRHADEKGPKQVVVFGLSGVLLSGVFYALAAWNDGSPVLAL
ALLCVGRLVLGIGQSFAGTGATLWGVGVVGSLHIGRVISWNGVATYGAMAIGAPLGVWIY
HLGGLRLLAIVIVLVAGAAILLALPRPAVTVTPGKKLPFREVLGKVWLYGVILSLASAGF
GVISTFITLFYASRQWDGAALTLSLFSCAFVGTRLLFPNVINRFGGLRVALACFLVESAG
LLLVWLASHPLMAEAGAFFAGAGFSLVFPALGVVAVKAVSAQNQGSALATYTIFLDLSLG
VVGPAAGVMMAYTDIDAIYLAAAGLALVGLLLTVRLYQRGGRDAKAV