Protein Info for DDA3937_RS00550 in Dickeya dadantii 3937
Annotation: endoglucanase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to GUNY_DICD3: Minor endoglucanase Y (celY) from Dickeya dadantii (strain 3937)
KEGG orthology group: K01179, endoglucanase [EC: 3.2.1.4] (inferred from 100% identity to ddd:Dda3937_01994)Predicted SEED Role
"Endoglucanase precursor (EC 3.2.1.4)" (EC 3.2.1.4)
MetaCyc Pathways
- cellulose degradation II (fungi) (2/3 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 3.2.1.4
Use Curated BLAST to search for 3.2.1.4
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See P27032 at UniProt or InterPro
Protein Sequence (332 amino acids)
>DDA3937_RS00550 endoglucanase (Dickeya dadantii 3937) MGKPMWRCWALMLMVWFSASATAANGWEIYKSRFMTTDGRIQDTGNKNVSHTEGQGFAML MAVHYDDRIAFDNLWNWTQSHLRNTTSGLFYWRYDPSAANPVVDKNNASDGDVLIAWALL KAGNKWQDNRYLQASDSIQKAIIASNIIQFAGRTVMLPGAYGFNKNSYVILNPSYFLFPA WRDFANRSHLQVWRQLIDDSLSLVGEMRFGQVGLPTDWAALNADGSMAPATAWPSRFSYD AIRIPLYLYWYDAKTTALVPFQLYWRNYPRLTTPAWVDVLSSNTATYNMQGGLLAVRDLT MGNLDGLSDLPGASEDYYSSSLRLLVMLARGK