Protein Info for DDA3937_RS00540 in Dickeya dadantii 3937

Annotation: cellulose biosynthesis protein BcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1298 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF07721: TPR_4" amino acids 121 to 145 (25 residues), 11 bits, see alignment (E = 0.00022) PF13432: TPR_16" amino acids 277 to 332 (56 residues), 29.6 bits, see alignment (E = 2.7e-10) amino acids 351 to 414 (64 residues), 15.5 bits, see alignment 6.8e-06 amino acids 388 to 442 (55 residues), 16.1 bits, see alignment (E = 4.4e-06) PF14559: TPR_19" amino acids 468 to 532 (65 residues), 37.1 bits, see alignment 1.1e-12 amino acids 690 to 742 (53 residues), 25.9 bits, see alignment (E = 3.6e-09) PF05420: BCSC_C" amino acids 916 to 1294 (379 residues), 363.9 bits, see alignment E=3e-112

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_01992)

Predicted SEED Role

"Cellulose synthase operon protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SES6 at UniProt or InterPro

Protein Sequence (1298 amino acids)

>DDA3937_RS00540 cellulose biosynthesis protein BcsC (Dickeya dadantii 3937)
MKMTTLTARIRRSLSLTGVVVGGVLSASALAAQANPALQALFEQADYWHQRSHDDLARDA
LQKILRVDADNPRALYLMALYAQNSGDGAEAAKWRERLSKASPQDPLLQALDNARQAATI
PQAQLALARQQARSGNISAALQTWRNLFSGSQPPASIAAEYYLTMAGDRTLLPQAIDHLR
EFAAAHPQDTNAAVALGKALTYQEPTRREGVQILSGLASGSADADQAMRQALLWLGPKAD
DAPFYQLYQQRHPQDTAVMDYYRKNVGGSEKDKGFTALNSGDLSNAQTAFSQVLQANPED
ADALAGMGYAAQRRGDFAAAASYLERAARQGGENSAQRQQQADDARFYAQLANAQQAMKN
GDTAQALTLSEPLAQAGGDKGLTAKLFRADVLRRTNNFPQAERLYRDVLQTDADNRNAKE
GLYYVLREQNRADEANTLFAALPENVRRSMAPRPVATSAPVRNEAKQALAAGDTVRAIGL
LQQGIQRFPNDGWLKLDLARIYQQQGNMAAATSLMQPLFRAGAGADDLYAAALFASENNA
WQQASTLLSRIPPRNQNEDTRSLARRVNFNLQMATAQVYLSRGENAAAANTLRALSVTPP
DNPADAGKLAKSLAAAGDTAAAVAVVRNNMQRGVQGNAGDYADQVGVLNQAGLSDEAQSW
LSRPELVARSSATQLDGLRTGFVVREADRLRENQQYAQAYDKLARALQRDPKNTDLMFAM
ARLYQSGKMNKEAADVYDYLLSHDTPTQEARVGAINVALERHDANKAHALSTGLQGEQTP
ERLLLLARIADAEGNRDQAMAYLKTARSKAVGLEGAAPGAAPAIGGLAMTDNPFIDRSTP
TATRVASSSSSYGSVMPWQQRNGVATGDTAAGATTQQQAATLTQINGMMADLERDTGGWV
QTGVQIRARDGESGLSRLTEAKVPLTWSSGSFGDARINFSVTPMTLSAGTSSGDSNRQFG
TGALAQVVNASAQTLVNELGRNFNFSSLSSAQVLNILQNSTNKPNIDQVTVDSQGKQNAS
GAELNLSLISKNYKLDLGSTPLGQDLNTLVGGIQWSPKLTDFLTLVVTGERRAVTDSLLS
YVGAKDALTGKRWGQVTKNGGNVLLSYDNGDIGFYGGGGAYSYLGENVKNNTGVMANAGA
YIRPFHDRDRELKTGVSLSWMNFSQNLGYYSYGQGGYFSPQDYVSVSLPVEWSQKYDDLS
VKAGVAVGYQSYSRDRSAYFPNNPDWQTLLESAESLGLAKESHYAGDSKSGIGYNVHVGA
DYRVTKDVTVGGQMGYDTFGNYNETTARLYFRYGLGGK