Protein Info for DDA3937_RS00440 in Dickeya dadantii 3937

Annotation: anion permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 32 to 50 (19 residues), see Phobius details amino acids 55 to 73 (19 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 112 to 130 (19 residues), see Phobius details amino acids 134 to 134 (1 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details amino acids 217 to 240 (24 residues), see Phobius details amino acids 268 to 286 (19 residues), see Phobius details amino acids 292 to 309 (18 residues), see Phobius details amino acids 320 to 338 (19 residues), see Phobius details amino acids 343 to 372 (30 residues), see Phobius details amino acids 380 to 423 (44 residues), see Phobius details amino acids 443 to 464 (22 residues), see Phobius details PF00939: Na_sulph_symp" amino acids 6 to 470 (465 residues), 509.6 bits, see alignment E=1.1e-156 TIGR00785: transporter, divalent anion:Na+ symporter (DASS) family" amino acids 25 to 464 (440 residues), 382.6 bits, see alignment E=1.2e-118 PF03600: CitMHS" amino acids 47 to 409 (363 residues), 74 bits, see alignment E=1.3e-24

Best Hits

Swiss-Prot: 54% identical to YFLS_BACSU: Putative malate transporter YflS (yflS) from Bacillus subtilis (strain 168)

KEGG orthology group: K03319, divalent anion:Na+ symporter, DASS family (inferred from 100% identity to ddd:Dda3937_02536)

Predicted SEED Role

"Di-and tricarboxylate transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SEQ5 at UniProt or InterPro

Protein Sequence (470 amino acids)

>DDA3937_RS00440 anion permease (Dickeya dadantii 3937)
MSANNSRLVKLLIILGIAVIFWFVPVPEGVSPAAWHLLAIFIATVIGLILSPYPLGAIAI
FSITAVAALGLLPVKDVLVGFGDPTIWMIACAFFISRSFIKTGFGRRIGFLFISKLGNSS
LGLAYGLVFTDLLFSPAMPSTSARCGGIITPLFRSIAEAYGSTPEQGTQRRIGSFLVQTI
FQCNAITSAMFMTSMAGNPLISKLATQFGVHLTWTEWAAATLVPGLLSLIVIPLVLYRFY
PPELKKTPEMRELAKVRLHEMGPMSRNEWIVLCVFLGLVVFWVLGSTLNIDATLTALGGL
SVLLLTRALSWEDVTGEKEAWHTVVWFAVLMMLATQLNKMGLIAWLGGIAGHAVAGMHWL
PMVGLLLLVYYYSHYFMASAVAHISAMYAIFVSIAIAAGAPPVLTVLAFAAFSNLFMATT
HYSGGPAPIMFGCGYLSLGTWWKIGFLVGLVVIPIWLGIGSLWWKVLGMW