Protein Info for DDA3937_RS00355 in Dickeya dadantii 3937

Annotation: universal stress protein UspA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 PF00582: Usp" amino acids 3 to 138 (136 residues), 84.6 bits, see alignment E=5e-28

Best Hits

Swiss-Prot: 91% identical to USPA_SHISO: Universal stress protein A (uspA) from Shigella sonnei

KEGG orthology group: K06149, universal stress protein A (inferred from 98% identity to ddc:Dd586_4090)

Predicted SEED Role

"Universal stress protein A" in subsystem Universal stress protein family

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SEN8 at UniProt or InterPro

Protein Sequence (144 amino acids)

>DDA3937_RS00355 universal stress protein UspA (Dickeya dadantii 3937)
MAYKHILIAVDLSPESKVLVEKAVSMARPYDAKVSLIHVDVNYSDLYTGLIDVNLGDMQQ
RISEETQNALKELADNAGYPISETLSGSGDLGQVLVDAIRKYDVDLVLCGHHQDFWSKLM
SSARQLINTVHIDMLIVPLREEEE