Protein Info for DDA3937_RS00350 in Dickeya dadantii 3937

Annotation: universal stress protein UspB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 111 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details PF10625: UspB" amino acids 1 to 106 (106 residues), 178.6 bits, see alignment E=1.4e-57

Best Hits

Swiss-Prot: 89% identical to USPB_PECCP: Universal stress protein B (uspB) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K06144, universal stress protein B (inferred from 96% identity to dze:Dd1591_4116)

Predicted SEED Role

"Universal stress protein B" in subsystem Universal stress protein family

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SEN6 at UniProt or InterPro

Protein Sequence (111 amino acids)

>DDA3937_RS00350 universal stress protein UspB (Dickeya dadantii 3937)
MISTFALFWALCVVCVINMARYYSSLRVLLLILRDCDPLLYQYVDGGGFFTSHGQPSKQL
RLVRYIYAQRYLDHHDPEFIRRCARVRGQFLLTSALCGLVVVSLIALIIWH