Protein Info for DDA3937_RS00300 in Dickeya dadantii 3937
Annotation: extracellular solute-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K02027, multiple sugar transport system substrate-binding protein (inferred from 100% identity to ddd:Dda3937_01150)Predicted SEED Role
"Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE" in subsystem Bacterial Chemotaxis or Maltose and Maltodextrin Utilization
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See E0SEM6 at UniProt or InterPro
Protein Sequence (456 amino acids)
>DDA3937_RS00300 extracellular solute-binding protein (Dickeya dadantii 3937) MRKLVSLSLSVLLASGLIAHSAVADVIKLKLWTLNDRNAPMRTVNIEEAAGVLNQQFAAA GVDRKIVIDTHASAVQGWDDLALDTLKAFGVNQGPDIVLLPHEWIGEFARNGYAMPMDGQ IKANPWVYADILPVLWEAMKYQGKVYGVPQDAEIRMFFYNKDMLRKIGKDEAFIDSLPAR VDSGEFTMDDLTALAKEVVDRHAAPIGMLHRPNVGIDYLMVFAACGAKFMDEKTGKLLFA KKEVETALSWYARNVAAGVTPTDNTAMSWDTIQTAFKQEKAFLFHQGIWAMAWQVNDNFG PAWPADKAGYTHKIGWIPAPAAVKGGKPANLSHPIAYVVSNKSQYKDLAAQLVAIASLPY YNNRHAVSSYHTAISYAQTAMPQYTDNWALSEAGKMMKNITFVPNHARFGDYNRVLFKGL QAVETKRMTPAQAVDFIADELETQLGKDVEIVDSLH