Protein Info for DDA3937_RS00015 in Dickeya dadantii 3937

Annotation: ATPase RavA stimulator ViaA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 PF05762: VWA_CoxE" amino acids 312 to 455 (144 residues), 44.7 bits, see alignment E=1.1e-15 PF13519: VWA_2" amino acids 328 to 427 (100 residues), 33 bits, see alignment E=8.2e-12

Best Hits

Swiss-Prot: 75% identical to VIAA_PECCP: Protein ViaA (viaA) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_00157)

Predicted SEED Role

"FIG00637882: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SDT4 at UniProt or InterPro

Protein Sequence (491 amino acids)

>DDA3937_RS00015 ATPase RavA stimulator ViaA (Dickeya dadantii 3937)
MLTLESLEMLLSIDENDLLDDVIITLMATPQLMMFFDKYPRLKAAVMRDLPEWKENLRQR
LRNTQAPPELEKEFTCYQQTQLISDHTFQSNLPDIMSTLHNVDSPFLNQAEKLVHSASHS
SESRISSSQHSLFMQRWRLSLTLQTLNLHQQIMEQERDQLLDEIQKRLTISGALEPILAD
NDTAAGRLWDLSASKRMKQPFNALLEVGAFLRQQPELQRLAERLGRSRETKSVLSQDAPK
EAFQVMVREPAFAPEQVSGIHQSDDILRLLPTELSTLGISELEFEFYRRLSEHRLLTYRL
QGESWREKTLERPVVHQHNEQQPRGPFIVCVDTSGSMGGFNERCAKAFCLALMRIALADN
RRCYIMLFSTGIVSYDLTSESGLEEAIRFLSQTFRGGTDLNSCLSALLEKMDSQSWQDAD
AVIISDFIAQRLPDELVNEVKRRQHRLQHRFHAVAMSAHGKPGILRIFDHIWRFDTGLKS
RLLRRFQHEKV