Protein Info for COO64_RS21350 in Pseudomonas sp. SVBP6

Name: flgK
Annotation: flagellar hook-associated protein FlgK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 678 TIGR02492: flagellar hook-associated protein FlgK" amino acids 3 to 374 (372 residues), 233.9 bits, see alignment E=2.4e-73 PF22638: FlgK_D1" amino acids 95 to 323 (229 residues), 241.2 bits, see alignment E=1.7e-75 PF21158: flgK_1st_1" amino acids 338 to 420 (83 residues), 30.2 bits, see alignment E=5.8e-11 PF06429: Flg_bbr_C" amino acids 637 to 676 (40 residues), 31.3 bits, see alignment 1.8e-11

Best Hits

KEGG orthology group: K02396, flagellar hook-associated protein 1 FlgK (inferred from 69% identity to ppf:Pput_1474)

Predicted SEED Role

"Flagellar hook-associated protein FlgK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (678 amino acids)

>COO64_RS21350 flagellar hook-associated protein FlgK (Pseudomonas sp. SVBP6)
MASLINIGLSGASNAQSGMHTTGNNITNVDTAGYSRQQNIQSTKGSIREGHVFIGTGTTL
ADVRRVYNNFLENQLRTTSSLSSDSNAYLDQIGPIDKLLSDKDTGITGALKSFFSSLQNA
AAKPTEDASRQLLLTSAQALSKRFNTIAAQLNQQNSNLNGNLSSMSTQVNNLTAAIAQYN
DQISRVSVVQGSPNDLLDKRNEAVRQLSELVGVDVTEREGNLDVYLKNGQSLVLGTSTNT
LSTVASPTDPTRMNLQLNRGTTKIDITASVTGGEIGGVLRYRTDVLDPSLNELGRVALVV
ADQINSQLAQGIDKNGNFGASMFNDINSAALISQRSIAKAGNSAGSGNLDVTIKNTGKLT
TSDYQVTFTSATGYSVKKLPDGTDMGSFDLNDNPPKVIDGFSLNLNGGAVQAGDSFKITP
TRGAAGSIDTVLTDPKRIALAASLNATSGAGNQGTGIIGQPNLTSKLDIYDSTQRLALEN
GLKYSTPVKLVFGDEKTVPQTYTVHNAKGDPIASGTIIPGQENKLQINVPIVDANGNAVT
PAATFSFDMTVAGAPKKGDNYTVAMTGAGSADNRNGQAVIDLQTKQTIDLGDNGRGVSFT
DAYGKLVENVGGKTAQAKLDSDATGALRKSASEASNSVSGVDLDEETGNLIKYQQYYTAS
SQIIKIAQETFSTLINSL