Protein Info for COO64_RS04370 in Pseudomonas sp. SVBP6

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 transmembrane" amino acids 42 to 60 (19 residues), see Phobius details amino acids 79 to 100 (22 residues), see Phobius details amino acids 110 to 128 (19 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 196 to 216 (21 residues), see Phobius details amino acids 239 to 261 (23 residues), see Phobius details amino acids 275 to 297 (23 residues), see Phobius details amino acids 305 to 326 (22 residues), see Phobius details amino acids 332 to 353 (22 residues), see Phobius details amino acids 362 to 385 (24 residues), see Phobius details amino acids 392 to 412 (21 residues), see Phobius details TIGR00896: cyanate transporter" amino acids 44 to 394 (351 residues), 467.6 bits, see alignment E=1.3e-144 PF07690: MFS_1" amino acids 60 to 376 (317 residues), 81.7 bits, see alignment E=2.5e-27

Best Hits

KEGG orthology group: K03449, MFS transporter, CP family, cyanate transporter (inferred from 87% identity to ppw:PputW619_4246)

Predicted SEED Role

"Cyanate transport protein CynX" in subsystem Cyanate hydrolysis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (427 amino acids)

>COO64_RS04370 MFS transporter (Pseudomonas sp. SVBP6)
MGHDTTRTAAPANGPELEELLIDAEADDEQVQQQPVLLKRPWLLLLGLVLVALNLRPALS
SMAPLLSQVCDSLGLTASQAGLLTTLPVLCLGLFAPLAPLLARRFGSERVILGILLVLAA
GIAVRSAFGSTGVFVGSIMAGASIGVIGVLLPGIVKRDFPKHAGTLTGVYTMALCLGAAM
AAGATVPLSERLGDSWSLGLGFWLIPALLAALIWLPQAREGHGAHHVAYRVRGLLRDPLA
WQVTLYMGLQSSLAYIVFGWLPSILIGRGLSPTQAGLVLSGSVIVQLISSLSAPWLATRG
KDQRLAIVIVMLMALAGLFGCLYAPLDGLWGWAIVLGLGQGGTFALALTLIVLRSKDAHV
AANLSSMAQGIGYTLASMGPFAVGLVHDLTGGWSAVGWIFAVLGAGAIGFGLKAGRNLHV
QVVSERV