Protein Info for CCNA_03652 in Caulobacter crescentus NA1000 Δfur

Annotation: ATP-dependent nuclease subunit A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1153 TIGR02784: double-strand break repair helicase AddA" amino acids 3 to 1140 (1138 residues), 1457.3 bits, see alignment E=0 PF00580: UvrD-helicase" amino acids 11 to 462 (452 residues), 151.6 bits, see alignment E=9e-48 PF13245: AAA_19" amino acids 15 to 449 (435 residues), 42.1 bits, see alignment E=2.4e-14 PF13361: UvrD_C" amino acids 743 to 876 (134 residues), 43.9 bits, see alignment E=5.4e-15 PF12705: PDDEXK_1" amino acids 980 to 1121 (142 residues), 51.7 bits, see alignment E=3e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_3538)

Predicted SEED Role

"FIG061771: ATP-dependent nuclease subunit A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CCR6 at UniProt or InterPro

Protein Sequence (1153 amino acids)

>CCNA_03652 ATP-dependent nuclease subunit A (Caulobacter crescentus NA1000 Δfur)
MHDPQRIAADPTISAFVTANAGSGKTKTLIDRVARLLLAGVEPQAILCVTYTKAAAAEMQ
RRLFDRLGKWSVTSDADLRAELVKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTI
HAFCEKLLRRFPLEAGVSPGFTVMDDQAGAAIARAARRAVAAWVDSHDDAFSEAYARFSV
ALDFQSFEAMFAGFEARRGQIMTYVQRCGGLAGAVSDAWRRCGFDGPTSAEDLATRAMAR
LDLPAWRAVASVLFDGGGKQDAKSAEALAAVARDPDATLDLALRALFTEGGEGTPATWPA
KTSGLKSREDLREALLLEQAKLEAAREQVRAARVAEDTQNALLLAGLYIERHMAEKEARG
ALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHILLDEAQDTAPEQWEILRALTADFFV
GETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPTRLLEETQGYISRIEAVGAVGKGVPL
TVSYRSTHEVLSFVDALFSDPDTREGVPPPVGQDLVRHELFRHGHPGCVDLWPLTRELPG
EDREAWEKPLDEEGERSANRRLAEAIAAETRAILDRGDAVFDKDLGRHRAAHAGDILVLV
RRRKALFEEIIRALKRRGVPVAGADRLALSSHIAFEDLVALGRFILFPDDDLTLAALLKT
PFCGLGDDDVYALAKGRRGTLWVELTRRSEERPEWAAARAVLDWALAEGRRRQPFEFYAG
WLGLTDADGRSHRAKVLTRLGAEAEEALDEFLAQVMEAEQRGVRDLEALVADFAALDIIV
KREMEGARREVRVMTAHGSKGLEAPIVFLPETTVKRGAGGSPLLVTEDGALLWCASGKND
CAVSAKARKLREDKESQEALRLLYVALTRARERLILCGRIDARTKDDKVGGWYAAARAAF
AHPDIAPGVRTIGDGETAFLRYGPDPLGAPRVAPATAAVAAPPAWIMAQATPEPAAARYA
APSRLEDTARVPAPSPLARIAGLGRYRRGELIHKLLQLLPDLPPAQRPDAARRILAAERD
LTDTQRTEMASAAFEVLEDARFAAVFGPNSRAEVALAGTSAHLPQGLAVSGRVDRLVVDD
ARVLVVDYKTNRPSPDRIEDADTAYLAQMAVYVAVLREVFPGRTVEAALVWTDGPKLMPV
PEKVMALALARLA