Protein Info for CCNA_03219 in Caulobacter crescentus NA1000 Δfur

Annotation: cation/multidrug efflux pump acrB5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1022 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 334 to 352 (19 residues), see Phobius details amino acids 358 to 379 (22 residues), see Phobius details amino acids 386 to 408 (23 residues), see Phobius details amino acids 429 to 449 (21 residues), see Phobius details amino acids 461 to 484 (24 residues), see Phobius details amino acids 522 to 543 (22 residues), see Phobius details amino acids 859 to 879 (21 residues), see Phobius details amino acids 886 to 907 (22 residues), see Phobius details amino acids 914 to 937 (24 residues), see Phobius details amino acids 958 to 978 (21 residues), see Phobius details amino acids 985 to 1006 (22 residues), see Phobius details PF00873: ACR_tran" amino acids 6 to 1013 (1008 residues), 666.4 bits, see alignment E=1.1e-203 PF03176: MMPL" amino acids 252 to 484 (233 residues), 22.7 bits, see alignment E=6.6e-09 PF02355: SecD_SecF" amino acids 340 to 477 (138 residues), 21.8 bits, see alignment E=1.7e-08 amino acids 864 to 1014 (151 residues), 25.4 bits, see alignment E=1.3e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_03219)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CCP7 at UniProt or InterPro

Protein Sequence (1022 amino acids)

>CCNA_03219 cation/multidrug efflux pump acrB5 (Caulobacter crescentus NA1000 Δfur)
MKFDLSTFAVRRWQFTLVAFGLLVMLGFNAFTSIPRSEDPHFPIPIVIVRAVLPGAEPSE
MEQLVVDPIEDAVDGLDNIEKVESVSLDGAAVVSVHFTWDVDPERKYDQVVREVNAIRGN
LPTGLARLDIQRARTTEVSVVQVALTSDTLPMRRLEKVADRLRERLDRVPGVREAQYWGA
PPSDVQVTLDLARLSALKLPATAVTDALRAAGAEAPIGAVQAGERRFNVKSGGAFRDLKT
IGDTPVRSIGGKVVRVSDVATIGWAQQEPTHVTRFNGKRAVFITVKQKDGQDVAKITQEV
RKVLDEYERALPAGVKLERAFFQAENVKHRLKNLFRDFGIALVLVLITLLPLGPRAGVVV
MVSIPLSLLIGLSMLQAFGFTLNQLSIAGFVLSLGLLVDDSIVITENIARRIREGEERTE
AAVNGARQIGLAVVGCTATLMLAFLPLMALPAGSGAYIKSLPVTVLCTVGASLLVSLTII
PFLASRILDKHSDPEGNALLRAVNGGIQRFYRPVLHASLARPWLALALMLALCATTVPLV
KVIGSSLFPPAETPQFLIRIETPDGASLARTDQALRFVDARLAKEPEILWRASNLGRGNP
QIFYNKTQRESSNSFAEVYASFEAWKPGKSDKVLDALRADFAKYPGARITVVAFENGPPI
DAPIAIRITGQNLEVLKALAARTEAALKDTPGARDVSNPMRLDRTDLDLGVDEAKAAALG
VPAGAARRVTRLALSGEEAARFRDPDGDDYAVRVRLPTAQVDGAARNPLSALNGVYVPTA
EGEAAPLGAIATPTLRSSPARIDRFDRERTVTVTSYVATGYLTAKVTQDVVQRLEKEVPM
PPGYRLSLGGQAEAQSESFAGLGAAVLVAIFGILAVLVLEFQKFKTALVVAGIIPFGIFG
AVLALALTGNSLSFTATIGLIALIGIEIKNSILLVDFTEQLRREGMNLHDAIEKAGEVRF
LPVLLTSVTAIGGLLPLALERSGLYSPLAIAIIGGLITSTLLSRVATPVMYWLTARGKAE
AV