Protein Info for CCNA_02905 in Caulobacter crescentus NA1000 Δfur

Annotation: very short patch repair (Vsr) endonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 125 PF04480: DUF559" amino acids 14 to 120 (107 residues), 157.7 bits, see alignment E=4.2e-51

Best Hits

Swiss-Prot: 38% identical to Y925_HAEIN: Uncharacterized protein HI_0925 (HI_0925) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_02905)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CBR7 at UniProt or InterPro

Protein Sequence (125 amino acids)

>CCNA_02905 very short patch repair (Vsr) endonuclease (Caulobacter crescentus NA1000 Δfur)
MHSTCQPPHARWMNRTALARRLRQRQTFAEKALWTLVRNRRLGGFKFQRQAVIDRYIVDF
VCESAKVIVELDGAAHDGREEHDANRARILEPCGYLVLRFRNEQVLVDPGGTTDEILTVL
RMGRA