Protein Info for CCNA_02243 in Caulobacter crescentus NA1000 Δfur

Annotation: D-alanyl-D-alanine serine-type carboxypeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 451 signal peptide" amino acids 1 to 50 (50 residues), see Phobius details PF00768: Peptidase_S11" amino acids 64 to 281 (218 residues), 205 bits, see alignment E=2.6e-64 PF13354: Beta-lactamase2" amino acids 67 to 207 (141 residues), 46.5 bits, see alignment E=6.1e-16 PF05036: SPOR" amino acids 375 to 449 (75 residues), 34.3 bits, see alignment E=4.8e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_02243)

Predicted SEED Role

"D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)" in subsystem Peptidoglycan Biosynthesis (EC 3.4.16.4)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.4.16.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C8K5 at UniProt or InterPro

Protein Sequence (451 amino acids)

>CCNA_02243 D-alanyl-D-alanine serine-type carboxypeptidase (Caulobacter crescentus NA1000 Δfur)
MWRCGTASSSNDGRRFMFARLTSARSLLAAAGLALTCLAGTLAPSAASAAVPYLQLNASE
PKYAAIVIDANSGEVLYDKRGDSPRYPASITKVMTLYLTFEALSEGRLKLTDQIVMSPRA
AAQAPTKIGLRPGESMTVDEAIKAMAVKSANDVATAVAERLAGSESRFAALMTLRGQELG
MRNTRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSVKGFYFRGNYVKGHNRL
LDSMEGFDGLKTGYTNASGFNLAGSAVRDGRRLIAVVLGGPSTAWRDNNMEDLLLTGFDV
IKRRSRGERTTIAANIYEDEPSGPIERPSAEQGDGDQAGLSIVLTENPRSAPVKVSPTLR
GAQAATPVKAAKKPKGEWGVQVGAFRSKSLANEQLKLVRGRITKLVSDAEGAVEGAGGMF
RAQFQGMTNEAAREACSALKAKRMPCIVLKP