Protein Info for CCNA_02083 in Caulobacter crescentus NA1000 Δfur

Annotation: chromosome segregation and condensation protein B scpB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 TIGR00281: segregation and condensation protein B" amino acids 11 to 174 (164 residues), 96.1 bits, see alignment E=9.5e-32 PF04079: SMC_ScpB" amino acids 12 to 165 (154 residues), 161.9 bits, see alignment E=4.8e-52

Best Hits

KEGG orthology group: K06024, segregation and condensation protein B (inferred from 100% identity to ccr:CC_2004)

Predicted SEED Role

"Segregation and condensation protein B" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C850 at UniProt or InterPro

Protein Sequence (221 amino acids)

>CCNA_02083 chromosome segregation and condensation protein B scpB (Caulobacter crescentus NA1000 Δfur)
MTELDPLFVERCIEALLFAAAEPLSDVDLAKRLPEGADIAAGIDALRVRYEGRGVELACV
AGRWRFQTAADLSFLMTEEREEPRRLSKAAQETLAIVAYHQPVTRAEIEAVRGVQASRGT
IDVLLELGLIRMRGRRRTPGRPVTFGTTDAFMEHYGLATLADLPGIAEMKAAGLLEMNLP
PGFTVPDPLGLRAGEEEDPLDFDDGETPEFAQDFLGEPEKA