Protein Info for CCNA_01837 in Caulobacter crescentus NA1000 Δfur

Annotation: transposase, IS30 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 PF13936: HTH_38" amino acids 4 to 47 (44 residues), 59.5 bits, see alignment 3.2e-20 PF13384: HTH_23" amino acids 9 to 46 (38 residues), 27.4 bits, see alignment 3.4e-10 PF00665: rve" amino acids 173 to 268 (96 residues), 33.9 bits, see alignment E=4.6e-12

Best Hits

KEGG orthology group: K07482, transposase, IS30 family (inferred from 100% identity to ccr:CC_1761)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C8B1 at UniProt or InterPro

Protein Sequence (342 amino acids)

>CCNA_01837 transposase, IS30 family (Caulobacter crescentus NA1000 Δfur)
MGSRYDHITLQERHQIARWRDAKVSVRVISERLGRHPSTIHREIRRNWFDDGPWLRGYFA
VAANERASTRRRRVGKLHRDPELARFVTERLQETWSPEQIAGHLKSTRQLQAYACHETIY
RYVYGPDGRAAELYKLLPRMRRRRRARYARRPRGLHIPPHNTIAQRPAHIGERQSYGHWE
CDLIAFRKEYGRHNITTLVERRSRYLIMIKNPSRSSTGIMAGLAERLEPFPPPMRQSITF
DRGTEFAFFATLKRSLEIDSYFCKPQAPWQKGTVENTNGRLRRFLPSDTDIALVPPEKLL
ELSTRLNRIPRKCLGYRTPEDVLAEQIAVTAGTRATNGLCAV