Protein Info for CCNA_01769 in Caulobacter crescentus NA1000 Δfur

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 621 PF00005: ABC_tran" amino acids 19 to 174 (156 residues), 80.1 bits, see alignment E=8.9e-26 amino acids 326 to 457 (132 residues), 66 bits, see alignment E=2e-21 PF12848: ABC_tran_Xtn" amino acids 213 to 288 (76 residues), 89 bits, see alignment E=6.1e-29 PF16326: ABC_tran_CTD" amino acids 551 to 614 (64 residues), 40.5 bits, see alignment E=9.1e-14

Best Hits

KEGG orthology group: K06158, ATP-binding cassette, sub-family F, member 3 (inferred from 100% identity to ccr:CC_1698)

Predicted SEED Role

"ABC transporter ATP-binding protein uup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C913 at UniProt or InterPro

Protein Sequence (621 amino acids)

>CCNA_01769 ABC transporter ATP-binding protein (Caulobacter crescentus NA1000 Δfur)
MLQINDLTFNAWGRRFFDKATVSLPPGAKVGLIGRNGVGKSTLFKLILGQLHAGDDEISL
PKSARIGSVDQEHPATPVSLLETVLEADIERHTLMTRLETADPEEMGEIWARLIEIDSDS
APARASEILVGLGFTQEDLRRPMSEFSGGWRMRVALAAALFAEPDMLLLDEPTNYLDLEG
ALWLEARLQKYPHTALIVSHDRELLNNSCTHMLHLAGGKLELYTGGYDDFEKRRAEKARL
QLSAKAKQDAERAHLQAFVDRFKAKASKAAQAQSRMKRLAKMEPVATTIEERVAPFTLPS
PPKPLPPPLIRLEKASVGYEAGRAILKNLNLRMDLDDRIGLLGVNGAGKSTFAKMIAGAL
GVQAGEFHRDKKMKVGWFHQHQIEAMDPNDTPLEIIRRAMPEASESSRRSKLAQFGLGFE
KQETKVESLSGGERARLLLNLVAMDAPHMLILDEPTNHLDIDSRRALLDALNDYMGAVIL
ITHDRSLMELVADRLWLAADGTVKSFDGDMDDYARFVLERAKQAVKPTQVSREPEKPVAP
PTKKAAVEPLRRKVEAAEQVMTRRTRDLAELEGQLGDPDLYVKNPGKVAELTKRRDNAQA
KLNEAEEAWMSLAEELAEAEG