Protein Info for CCNA_01744 in Caulobacter crescentus NA1000 Δfur

Annotation: AraC-family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 36 to 57 (22 residues), see Phobius details amino acids 63 to 86 (24 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 158 to 178 (21 residues), see Phobius details amino acids 186 to 205 (20 residues), see Phobius details PF12833: HTH_18" amino acids 263 to 345 (83 residues), 53.9 bits, see alignment E=1.9e-18 PF00165: HTH_AraC" amino acids 311 to 345 (35 residues), 30.4 bits, see alignment 3.2e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_1672)

Predicted SEED Role

"FIG00481638: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CA73 at UniProt or InterPro

Protein Sequence (370 amino acids)

>CCNA_01744 AraC-family transcriptional regulator (Caulobacter crescentus NA1000 Δfur)
MTDLAQIELAVRGLAVGAFAATGVSLAASRKMTPVRWLGVLLMACAIAHVIDSHFFYAED
RHFSVLTWALSAWTAAVFWLFCSVLFEDEPKIPTWRFIVPAFVIVQWAAGAFLPPSPARA
AVWWSFAAVSVALHGHILLMAWRGWRIDLVERRRHLRAPIAAAATGYMFVQTLCDLGFGQ
GPVLPSLAQALGLAALGVGSALALLRAEPVLVQASPAAGEAPSPKAAEALDLTPADRLVL
ARLDKAMNENEVWRGEDLSIGTLAALVGAPEHRLRKLINGTLGHRNFADYVNGRRIAAAK
VALADPEQALKSVSTIAYELGFASLGPFNRAFRAVTGVTPTAWRQETTPAYAPLRLVETG
EGASKSDKRA