Protein Info for CCNA_01710 in Caulobacter crescentus NA1000 Δfur

Annotation: BetA-family choline dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 509 PF00890: FAD_binding_2" amino acids 18 to 50 (33 residues), 21.9 bits, see alignment (E = 2.4e-08) PF07992: Pyr_redox_2" amino acids 18 to 243 (226 residues), 30.5 bits, see alignment E=6.7e-11 PF01266: DAO" amino acids 18 to 241 (224 residues), 33.1 bits, see alignment E=1.2e-11 PF05199: GMC_oxred_C" amino acids 371 to 497 (127 residues), 88.4 bits, see alignment E=1.7e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_01710)

Predicted SEED Role

"Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site" in subsystem Respiratory dehydrogenases 1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C784 at UniProt or InterPro

Protein Sequence (509 amino acids)

>CCNA_01710 BetA-family choline dehydrogenase (Caulobacter crescentus NA1000 Δfur)
MAIIDARTLPDASHLEADLVIIGGGLAGITLAKELAGGPLKVVVLESGGREMEPETQALY
AGACVQKADGNKDRPLHEFPVQSRVRALGGSGHVWGGKCGPLDPADFAERAWIPYSGWPI
SREAMQPYYDRACDMLEIDRFPPERPNAAEASLQPLALDARDGFFPAPRLFARISGRTDR
PAFDRFRTQFAEAPNIDVYLYANVVRIRRERNTITGLDIACLDGKRHKAKATRYVLATGG
IENVRLLLASDNLGNRHDLVGRFFQGHVTYSNDSDAQREGSAFAASRAEPLDLYAPALRY
GPHCVIGAGLAAQKRMKTGNFTATLFRANFANADAKVAAETQTISKASAQLDKGQAQPNL
LGFFAMTEHFPHPESRITLDQSQKDALGMPRVNLTWVHGKKDYDDLERSIDGLAAAMGAA
GEGRLCWSLRRDELLASSNASRHHMGTTRMHADPRKGVVDADGRLHEANNLYVAGSSVFP
TSGIVNPTLTILALTIRLADHLKSEKKAA