Protein Info for CCNA_01616 in Caulobacter crescentus NA1000 Δfur

Annotation: rod shape-determining protein RodA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 transmembrane" amino acids 23 to 47 (25 residues), see Phobius details amino acids 58 to 80 (23 residues), see Phobius details amino acids 84 to 106 (23 residues), see Phobius details amino acids 118 to 136 (19 residues), see Phobius details amino acids 148 to 165 (18 residues), see Phobius details amino acids 171 to 189 (19 residues), see Phobius details amino acids 194 to 214 (21 residues), see Phobius details amino acids 282 to 303 (22 residues), see Phobius details amino acids 315 to 339 (25 residues), see Phobius details amino acids 348 to 369 (22 residues), see Phobius details TIGR02210: rod shape-determining protein RodA" amino acids 24 to 373 (350 residues), 413 bits, see alignment E=5.3e-128 PF01098: FTSW_RODA_SPOVE" amino acids 52 to 373 (322 residues), 329.6 bits, see alignment E=1.1e-102

Best Hits

Swiss-Prot: 31% identical to FTSW_HALED: Probable peptidoglycan glycosyltransferase FtsW (ftsW) from Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9)

KEGG orthology group: K05837, rod shape determining protein RodA (inferred from 100% identity to ccs:CCNA_01616)

Predicted SEED Role

"Rod shape-determining protein RodA" in subsystem Bacterial Cytoskeleton or Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C9W3 at UniProt or InterPro

Protein Sequence (385 amino acids)

>CCNA_01616 rod shape-determining protein RodA (Caulobacter crescentus NA1000 Δfur)
MTLSGGLSRPGERDRPTIKFMEIDWTFCLFLCLIAGAGALMLFSIAGASWEPWAAKHLIR
FGLYFIMMVILAMCDLRWWFMAAYPIYVVGLLLLIAVEVAGDVSLGAQRWLSIGGFRFQP
SEIMKIGLVLALARYYHGLSADSARMSWRLLIPAGMIAAPVLLVAHQPDLGTALLIAATG
LSIVVLAGLSWRIIFAGIAAFVAAIPPFVMFVLHDYQRHRVMTFLNPEADPSGKGYQIVQ
SKIALGSGGLLGKGFGLGSQSQLNFLPEKQTDFIFATLAEEFGFVGCFAVLFLYGAVIFM
ALRIASISHSHFGRLAAGGTISTFAVYVLINGAMVMGMAPVVGVPMPMLSYGGTVMLTVM
IGFGLIQAVRVHRYTEVTSGKGSLV