Protein Info for CCNA_01579 in Caulobacter crescentus NA1000 Δfur

Annotation: cell wall degradation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF20142: Scaffold" amino acids 63 to 177 (115 residues), 42.6 bits, see alignment E=1.6e-14 PF01471: PG_binding_1" amino acids 203 to 260 (58 residues), 42.1 bits, see alignment 1.2e-14 PF03734: YkuD" amino acids 289 to 440 (152 residues), 84.4 bits, see alignment E=1.9e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_1511)

Predicted SEED Role

"L,D-transpeptidase YcbB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C6Z6 at UniProt or InterPro

Protein Sequence (502 amino acids)

>CCNA_01579 cell wall degradation protein (Caulobacter crescentus NA1000 Δfur)
MMRFTRTCGALAATLSLLSLEVAQAQSQRPPVVGARPVQSGPIVAPRPAVIPPDLSAVQL
SVEQVEVLRAVLGDAYSHGFAMTAFSPDRAIELYMAGDPASRAAGQAQLVSLTLAYARAV
RTGRLPISAFKAEWGLRPAAYDPTPEFVAAVQQGRLAEWLETLPPPYTGYQALRTGLATY
RDIAAKGGWLPIAAGPELKEGVTGARVVALEARLAAEDPTVAVDAAPVFDAALTQAVQRA
QKRFGLNPNGIVDRATLAALNIPVERRIDQIVANMERWRWLPQTLPAERIQVNVAAAILS
VFHHDTPTLTMRAVTGRPGDETPMLSSMIHSIVLNPPWNVPQSIASKEIWPKERASPGYL
ARNDFIVIPIEGGGTRLQQKAGPLAALGKVKFDFNNPYGVYLHDTPSRSRFDSFSRLASH
GCVRLQKPIELVNEVMRDDPTWTPEKVNETLASGETVRAKLPQQIAVYLLYWTAYVTPDG
QVNFRQDPYGWDRDLVQRIAAL