Protein Info for CCNA_01339 in Caulobacter crescentus NA1000 Δfur

Annotation: ArsR-family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 109 PF12840: HTH_20" amino acids 12 to 60 (49 residues), 41.1 bits, see alignment E=4.2e-14 PF01022: HTH_5" amino acids 14 to 59 (46 residues), 51.5 bits, see alignment E=2.2e-17 PF09339: HTH_IclR" amino acids 22 to 60 (39 residues), 24.8 bits, see alignment E=4.5e-09 PF12802: MarR_2" amino acids 23 to 68 (46 residues), 29.8 bits, see alignment E=1.6e-10 PF01047: MarR" amino acids 27 to 68 (42 residues), 26.9 bits, see alignment E=1.1e-09 PF13412: HTH_24" amino acids 32 to 59 (28 residues), 23.5 bits, see alignment E=1e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_01339)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C7U7 at UniProt or InterPro

Protein Sequence (109 amino acids)

>CCNA_01339 ArsR-family transcriptional regulator (Caulobacter crescentus NA1000 Δfur)
MSEALDRTLAALADPHRRRAVDLLRERPRRAGELAESLGLTAPAMSRHLRALRQSGLVEE
SHPEFDARVRVYRLRPGPMAELKAWLEAAEEHWVDQLSALKAHVESKAR