Protein Info for CCNA_01318 in Caulobacter crescentus NA1000 Δfur

Annotation: LSU ribosomal protein L5P

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 185 PF00281: Ribosomal_L5" amino acids 30 to 86 (57 residues), 93.7 bits, see alignment E=6.6e-31 PF00673: Ribosomal_L5_C" amino acids 91 to 183 (93 residues), 141.5 bits, see alignment E=7.7e-46

Best Hits

Swiss-Prot: 100% identical to RL5_CAUVN: 50S ribosomal protein L5 (rplE) from Caulobacter vibrioides (strain NA1000 / CB15N)

KEGG orthology group: K02931, large subunit ribosomal protein L5 (inferred from 99% identity to cse:Cseg_1503)

MetaCyc: 55% identical to 50S ribosomal subunit protein L5 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L5p (L11e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8H4E6 at UniProt or InterPro

Protein Sequence (185 amino acids)

>CCNA_01318 LSU ribosomal protein L5P (Caulobacter crescentus NA1000 Δfur)
MADQAYEPRLKTVYRERIRAAMKEQFGYTNEMQIPKLDKIVLNMGIGEAVADSKKAQTAL
KDLQAIAGQKPVATKARKSIAGFKLREGMVVGAKVTLRKDRMYEFLDRLVTIALPRVKDF
RGLNGKSFDGRGNYAMGLKEHLVFPEINYDQIEQIWGMDIIVCTTAKSDQEAKALLKEFQ
FPFVN