Protein Info for CCNA_01295 in Caulobacter crescentus NA1000 Δfur

Annotation: integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 transmembrane" amino acids 19 to 40 (22 residues), see Phobius details amino acids 52 to 70 (19 residues), see Phobius details amino acids 76 to 93 (18 residues), see Phobius details amino acids 133 to 156 (24 residues), see Phobius details amino acids 162 to 184 (23 residues), see Phobius details amino acids 190 to 208 (19 residues), see Phobius details TIGR03717: integral membrane protein, YjbE family" amino acids 18 to 209 (192 residues), 216.2 bits, see alignment E=1.3e-68 PF03741: TerC" amino acids 21 to 209 (189 residues), 144.6 bits, see alignment E=1.4e-46

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_1237)

Predicted SEED Role

"Integral membrane protein TerC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C7S8 at UniProt or InterPro

Protein Sequence (246 amino acids)

>CCNA_01295 integral membrane protein (Caulobacter crescentus NA1000 Δfur)
MFDALIAQLGAFQGPLTALLQVLMIDLVLAGDNAVAVGLAAGGLPAKERKKVILYGLGAA
VLLRITFALITTWLLGVVGLLLAGGFLLLWVCWKMWRELREQTTHDEADAMAMIDDDPST
EPRARPNKTFKAAFLQVLIADVSMSLDNVLAVAGAAREHPGILIFGLLLSIVLMGVAATA
IANLLHKHRWIGFVGLAIVLYVAAHMIWTGHRSVVMDLNHTPAYNAAVPDLIDITPDEVA
QHNKHR