Protein Info for CCNA_01108 in Caulobacter crescentus NA1000 Δfur

Annotation: nucleoside-diphosphate-sugar epimerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 286 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF01370: Epimerase" amino acids 98 to 208 (111 residues), 28.6 bits, see alignment E=4.8e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_01108)

Predicted SEED Role

"Nucleoside-diphosphate-sugar epimerases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C7B7 at UniProt or InterPro

Protein Sequence (286 amino acids)

>CCNA_01108 nucleoside-diphosphate-sugar epimerase (Caulobacter crescentus NA1000 Δfur)
MRLFVFGLGYVGAAFADALQDRGWDIAASARDPGQAQALRDKGITPADPADRDAMIAALA
GVNAILITAPPGPDGCPALESIVPALAQAQAYPDWIGYLSTTGVYGDFEGRWVFETSPLK
AQSVEGARRVGAERDWRQVGRGMGLTVTTFRLPGIYGPGRSALDRLRAGEGRRIVKPGQV
FSRIHVDDIVSGLLASLDHPRAGGVYNLVDDEPAPPQDVMEHAARLLGVPVPPDLPFNEL
GTSPATRRFYAENKRVSNARAKAELGWRPKHPTYREGLAAILKAGG