Protein Info for CCNA_01088 in Caulobacter crescentus NA1000 Δfur

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 175 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 59 to 82 (24 residues), see Phobius details amino acids 112 to 133 (22 residues), see Phobius details amino acids 145 to 168 (24 residues), see Phobius details TIGR00645: TIGR00645 family protein" amino acids 7 to 169 (163 residues), 169.6 bits, see alignment E=3.7e-54 PF03350: UPF0114" amino acids 14 to 130 (117 residues), 130.3 bits, see alignment E=2.1e-42

Best Hits

Swiss-Prot: 45% identical to Y950_PSEU5: UPF0114 protein PST_0950 (PST_0950) from Pseudomonas stutzeri (strain A1501)

KEGG orthology group: None (inferred from 100% identity to ccr:CC_1036)

Predicted SEED Role

"Uncharacterized protein UPF0114"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C751 at UniProt or InterPro

Protein Sequence (175 amino acids)

>CCNA_01088 hypothetical protein (Caulobacter crescentus NA1000 Δfur)
MKKPVLETWLERGLFASRWLMAPFYVGLVVALAALMVVFFQELFQELPRVPSMTPESAIL
MALTLIDLSLAANLMVIVILSGYENFVSKIDTASHEDRPEWMGTVDFSGLKMKLIASIVA
ISAIALLKAFLKLTEPGQTVDQVRLFWLVMVHLSFVVSGVLLAVMDWLNAKVAKS