Protein Info for CCNA_00956 in Caulobacter crescentus NA1000 Δfur

Annotation: flagellar biosynthesis protein FlhA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 transmembrane" amino acids 26 to 45 (20 residues), see Phobius details amino acids 51 to 70 (20 residues), see Phobius details amino acids 82 to 102 (21 residues), see Phobius details amino acids 124 to 145 (22 residues), see Phobius details amino acids 214 to 235 (22 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details amino acids 290 to 309 (20 residues), see Phobius details amino acids 314 to 330 (17 residues), see Phobius details TIGR01398: flagellar biosynthesis protein FlhA" amino acids 26 to 700 (675 residues), 950.5 bits, see alignment E=2.5e-290 PF00771: FHIPEP" amino acids 36 to 691 (656 residues), 851.8 bits, see alignment E=2.1e-260

Best Hits

Swiss-Prot: 100% identical to FLHA_CAUVC: Flagellar biosynthesis protein FlhA (flhA) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: K02400, flagellar biosynthesis protein FlhA (inferred from 100% identity to ccs:CCNA_00956)

Predicted SEED Role

"Flagellar biosynthesis protein FlhA" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C6S4 at UniProt or InterPro

Protein Sequence (700 amino acids)

>CCNA_00956 flagellar biosynthesis protein FlhA (Caulobacter crescentus NA1000 Δfur)
MADAAAPNASSMPSAKSLLDGLMRGEMGLALGVVGIIVLLIIPVPAPLLDVLLAISLTGS
VLILMTAILIKKPLEFTSFPTVLLVTTLFRLGLNIASTRLILSHGQEGTGGAGAVIEAFG
HLMMQGNFVIGVIVFIILIVVNFMVVTKGSGRIAEVAARFTLDSMPGKQMAIDADLSTGL
ISQDEAKIRRKELEQESTFFGAMDGASKFVKGDAIAGLIITAINIIGGIIIGVVQHKMPF
GDAASTYTIMTIGDGLVSQIPALIISIAAGMVVSKAGVEGSADKALTTQLAMNPVGLGMV
SASSGIIALIPGMPIFPFAAMALAAGALAYKRVQDAKKPKALDPADLEAAAPSEPEEEPI
SASLAIDDVKIELGYGLLTLINDLDGRKLTDQIRALRKTLASEYGFVMPPVRILDNMRLA
NQGYAIRIKEMEAGAGEVRLGCLMCMDPRGGQVELPGEHVREPAFGLPATWIADDLREEA
TFRGYTVVDPATVLTTHLTEILKENMADLLSYAEVQKLLKELPETQKKLVDDLIPGTVTA
TTVQRVLQSLLRERVSIRDLPQILEGVGEAAPHTASVTQLVEQVRARLARQLCWANRGDD
GALPIITLSADWEQAFAEALIGPGDDKQLALPPSRLQDFIRGVRDSFERAALAGEAPVLL
TSPGVRPYVRSIIERFRGQTVVMSQNEIHPRARLKTVGMV