Protein Info for CCNA_00777 in Caulobacter crescentus NA1000 Δfur

Annotation: PAS family GGDEF/EAL protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 807 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 46 to 63 (18 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 110 to 129 (20 residues), see Phobius details amino acids 141 to 165 (25 residues), see Phobius details amino acids 185 to 205 (21 residues), see Phobius details PF08448: PAS_4" amino acids 239 to 352 (114 residues), 31.2 bits, see alignment E=3.4e-11 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 359 to 521 (163 residues), 116.6 bits, see alignment E=9.1e-38 PF00990: GGDEF" amino acids 361 to 517 (157 residues), 144.6 bits, see alignment E=3.6e-46 PF00563: EAL" amino acids 540 to 770 (231 residues), 241.1 bits, see alignment E=1.7e-75

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_0740)

Predicted SEED Role

"sensory box/GGDEF family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C695 at UniProt or InterPro

Protein Sequence (807 amino acids)

>CCNA_00777 PAS family GGDEF/EAL protein (Caulobacter crescentus NA1000 Δfur)
MRVIASSLLDRFVAVLPSQVLADAPESLAGRVRMEQVQSILRMTPVMMSANIAIAFLVSL
AGMSHPHRVGIGIWAALVISYALLGLRGWVSAQRRKTGKAAVSARGVRRVVLQAALLGLL
WGVLPVLTFRLGDTSAMPMMVASVIAGMIGCGGFALLTLPAAALAYSTPMVLGSLYMLGT
SGDPILYALGGLLVFCYAVVIVSCLSHARIFAERLVAADELEKQKQVVSLLLSDFEEGAS
DWLWEVDAAGRLTYVSDRMAAAAGVDKDALLGQPMSDLCGAAEAPGGPVAALSALFAEQK
TFRDVVVSITVADDAGRPATHWWALSAKPVHDLDGLFVGFRGVGADITQAREDQERISHL
AHYDVLTQLPNRLSLLQNLGKAWMDHGRDKTSGCAVLCLDLDHFKGVNDSLGHPVGDALL
MQVASRLRSCVGETGMVARLGGDEFAVVCAPSPGHEALSALSQSIVETLSAPYDILGHNV
LIGASVGIAVAPFDADDPDGLLKNADLALYRAKGDGRGAYRFFETAMDVWAQERRALEMD
LREALARDELKLFFQPLIGRRDNETTGFEALLRWQHPTRGLVPPSDFIECAEQWGLIGRI
GEWVLNEACRTAATWPSHLTVAVNLSPNQFASGDLVDQVRAALKASGLAPARLELEITEG
LLLHDSAKTLEQLAALKALGVKIAMDDFGTGYSSLAYLWRFPFDKIKIDRSFVAEMQDNV
AIADILRTIALLGQTLNLEVTAEGVETQAQARLLAEMRCDQFQGFLFGRPMPVGDIPSFL
MAATARRMRGETGVDDDGEHAAVSQTR