Protein Info for CCNA_00603 in Caulobacter crescentus NA1000 Δfur

Annotation: integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 transmembrane" amino acids 117 to 136 (20 residues), see Phobius details amino acids 187 to 211 (25 residues), see Phobius details amino acids 214 to 237 (24 residues), see Phobius details amino acids 243 to 262 (20 residues), see Phobius details amino acids 276 to 296 (21 residues), see Phobius details amino acids 308 to 327 (20 residues), see Phobius details PF01944: SpoIIM" amino acids 121 to 299 (179 residues), 118.7 bits, see alignment E=1.2e-38

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_0568)

Predicted SEED Role

"FIG00791727: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C546 at UniProt or InterPro

Protein Sequence (332 amino acids)

>CCNA_00603 integral membrane protein (Caulobacter crescentus NA1000 Δfur)
MIDIKVDPRLKSQRFRQEREADWRRLERLIGKVEKGSIADLSDEDLLAAPVLYRSALSAL
SVARATSLDRALIAYLETLCARAYFFVYGSRETLWGQLKGFFAGDWPAAVRGLWRETLVS
AALMALGVMIAAWLVGHDPDWFYAFVPRELAGGRDPAATTEALAATLGGKDASGLTVFAT
FLFTHNAQVALLAFALGFALCVPTAGLVLYNGAMLGAFLALFASRGLGIELGGWLLIHGV
TELFAVILAGAAGLRIGWAAAFPGERRRLDALAEAGRHAATVMGGVVVMLFLAGLLEGFG
RQLITDTAARYGVAAATALMWGLYFYGPRRHG