Protein Info for CCNA_00307 in Caulobacter crescentus NA1000 Δfur

Annotation: phospholipid-lipopolysaccharide ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 607 transmembrane" amino acids 27 to 47 (21 residues), see Phobius details amino acids 66 to 84 (19 residues), see Phobius details amino acids 146 to 164 (19 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details amino acids 252 to 275 (24 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details PF00664: ABC_membrane" amino acids 31 to 286 (256 residues), 105.4 bits, see alignment E=4.4e-34 PF00005: ABC_tran" amino acids 374 to 522 (149 residues), 108.1 bits, see alignment E=5.7e-35

Best Hits

KEGG orthology group: K11085, ATP-binding cassette, subfamily B, bacterial MsbA [EC: 3.6.3.-] (inferred from 100% identity to ccr:CC_0305)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.-

Use Curated BLAST to search for 3.6.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C504 at UniProt or InterPro

Protein Sequence (607 amino acids)

>CCNA_00307 phospholipid-lipopolysaccharide ABC transporter (Caulobacter crescentus NA1000 Δfur)
MTAQDRPQPSNRALMGRMWREFLQPRWKGFLVSMISAVIVARLTVMLGEYVEPAVDKLIA
HPQPGALIWVPLTIAALAVGRGVFQVIQASLINRIGNGVVGDMQTRLFGRLIRADLARLR
GAHSGSYVASVLYDAGLIREAATTGVVNYVREALIVAITLWALFNSDPILAAGVLIIVPG
VSGVIRHFAKRTTKAAKGAMGETSNLSTAIMESLDGVKIVKMENREAYEEARVAAVVERR
QRHLIKGSNARAMAAPATELFSQLVIAAVFAYAGWRAITGALVVGPFTLPPITPGGFLKF
VILLGIAAQSLRQVANLQTVFSEGLTAARRLFEALDVAPTIVDPADAKALPPGESMIALA
DVTFSYGADIPALSSVNLQARKGETVALVGPSGGGKSSILNLIPRFYDVNAGAVTIDGHD
VRSVTIASLRDRIALVTQEPFLFDDTIRANIAYARPGASQLEIEAASRQAAAHEFIQALP
EGYDTAVGEGGARLSGGQRQRIAIARAFLKDAPILLLDEATSALDTESEAQVQAALERLM
AGRTTILIAHRLSTVKNADRIYVIDKGRVVETGSHAELVRAGGLYARLAKAQDLDHPAPD
QDGEITA