Protein Info for CCNA_00150 in Caulobacter crescentus NA1000 Δfur

Annotation: PDZ domain family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 PF13365: Trypsin_2" amino acids 55 to 188 (134 residues), 58 bits, see alignment E=3.8e-19 PF13180: PDZ_2" amino acids 233 to 310 (78 residues), 53 bits, see alignment E=7.2e-18 PF00595: PDZ" amino acids 234 to 279 (46 residues), 29.9 bits, see alignment 1.2e-10 PF17820: PDZ_6" amino acids 246 to 285 (40 residues), 44 bits, see alignment 3.2e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_0151)

Predicted SEED Role

"FIG00483161: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C2W3 at UniProt or InterPro

Protein Sequence (325 amino acids)

>CCNA_00150 PDZ domain family protein (Caulobacter crescentus NA1000 Δfur)
MPTPFDGYEVEARLRPSAEAYRFDLDQALASMVALEAKVPADAYTAAILGTERVGNGAVI
SPSGLVVTMAYLITEAEEVVLTRNDGRRVPAHVLGLDARSGLGLVQALEPLDLPAITLGS
ARDLEPSSPIIAAGAGGRAHAVAGQVLTRIPFAGYWEYKLDDAIITAPAHPHWSGAALIG
PKGDLVGLGSLTLEGRDQNGEARPLNMFVPAELLPPILDDLARGRSPQPPRPWLGVFAQE
MENHVVIVGVSPKGPAARAELRPGDLILAIDGKPVSDLSAFYDALWDLGEAGVTVPLKIL
REGDAFEMEVRSMDRANLLKKRRLN