Protein Info for CCNA_00109 in Caulobacter crescentus NA1000 Δfur

Annotation: thioredoxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 PF00085: Thioredoxin" amino acids 21 to 119 (99 residues), 91 bits, see alignment E=1.5e-29 TIGR01068: thioredoxin" amino acids 32 to 120 (89 residues), 96.8 bits, see alignment E=3.6e-32 PF13098: Thioredoxin_2" amino acids 33 to 116 (84 residues), 35.6 bits, see alignment E=3.6e-12 PF13432: TPR_16" amino acids 135 to 197 (63 residues), 25.4 bits, see alignment E=6e-09 amino acids 217 to 259 (43 residues), 20 bits, see alignment 2.9e-07 PF14559: TPR_19" amino acids 144 to 206 (63 residues), 49.5 bits, see alignment E=1.5e-16 PF14561: TPR_20" amino acids 211 to 298 (88 residues), 103.8 bits, see alignment E=1.8e-33

Best Hits

KEGG orthology group: K05838, putative thioredoxin (inferred from 100% identity to ccs:CCNA_00109)

Predicted SEED Role

"FIG000875: Thioredoxin domain-containing protein EC-YbbN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C5Z7 at UniProt or InterPro

Protein Sequence (299 amino acids)

>CCNA_00109 thioredoxin (Caulobacter crescentus NA1000 Δfur)
MSLIGEKPAPSSKSDHIKDGTDASFMADVIEASKTQPVIVDFWATWCGPCRQLTPTIEKV
VTAAKGAVKLVKIDVDKNPGFAGQLRVQSIPTVYAFVDGRPVDAFQGALPESQVRAFVEK
LAGAAEGGALDEIIAMGKESLEIGDLGGAAQAFAQALQIDPTSAKALGGMARVYLANGDP
EGAAEVVAMAPADAKDPDLDAARAALALAAEAPSETAAFEQRLAADPDDHEARLELAKAL
AGVGRLQDAADHLLTIIARDRTWNDDAARKQLLTVFEAAGPTSEVAKQGRRKLSSILFS