Protein Info for CCNA_00087 in Caulobacter crescentus NA1000 Δfur

Annotation: conserved membrane spanning protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 transmembrane" amino acids 12 to 27 (16 residues), see Phobius details amino acids 35 to 54 (20 residues), see Phobius details amino acids 66 to 86 (21 residues), see Phobius details amino acids 148 to 168 (21 residues), see Phobius details amino acids 204 to 226 (23 residues), see Phobius details amino acids 232 to 258 (27 residues), see Phobius details amino acids 268 to 290 (23 residues), see Phobius details amino acids 310 to 335 (26 residues), see Phobius details PF01594: AI-2E_transport" amino acids 16 to 337 (322 residues), 152.7 bits, see alignment E=7.4e-49

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_00087)

Predicted SEED Role

"FIG00482792: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C5X4 at UniProt or InterPro

Protein Sequence (369 amino acids)

>CCNA_00087 conserved membrane spanning protein (Caulobacter crescentus NA1000 Δfur)
MPAPAPPSVTTRNAVVFLAVIAGAATLKWMQDILTPLALALFLAVMIDSFARVLTDRTPR
FPRRLALPTAVVLSLWLFGMSVWIVIDNGKEFFDHSSQYVDSLNAIIARFTPTIARLAPG
LELSVAPTIGDLVKHLNPQRYFGDVAQSFNSFATSAILVLIYLGFILASRRGFARKIVAL
FPHHAERETNMKMFQRIRDGVEQYLWIQTVTGLMIAASAFMVMTLVGLDNAFFWAFLIFL
AAYIPILGGAIGCFLPPIFALIQFPESLWPAVLLFVALQGIFFVVGNVILPRMQGDSLNM
DPTVVLLSLAVWGALWGVPGMFLSTPLTVAAMVILAQFEGSRWIAILLSEDGDPQGVPEI
PAADVAQKK