Protein Info for CCNA_00086 in Caulobacter crescentus NA1000 Δfur
Annotation: NAD-specific glutamate dehydrogenase GdhZ
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00260, glutamate dehydrogenase [EC: 1.4.1.2] (inferred from 100% identity to ccr:CC_0088)Predicted SEED Role
"NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form" in subsystem Glutamate dehydrogenases or Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis (EC 1.4.1.2)
MetaCyc Pathways
- methylaspartate cycle (15/19 steps found)
- L-glutamate degradation I (1/1 steps found)
- L-alanine degradation II (to D-lactate) (2/3 steps found)
- ethene biosynthesis IV (engineered) (1/3 steps found)
- L-glutamate degradation V (via hydroxyglutarate) (5/10 steps found)
- L-glutamate degradation XI (reductive Stickland reaction) (2/7 steps found)
- 4-aminobutanoate degradation V (1/7 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 1.4.1.2
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0H3C571 at UniProt or InterPro
Protein Sequence (1607 amino acids)
>CCNA_00086 NAD-specific glutamate dehydrogenase GdhZ (Caulobacter crescentus NA1000 Δfur) MSGVKIDPSNSLTAAYALTRGKTVQELALEERDFLAQVGADWAIEDAPVLSAKAAAASLA EFFDFARTLKGDQPTVRLRSAGEAGAARDLLEIVQPDRPFLVDSVMGEITESGFRVRAMF HPVVEIDGIARSFIQVHLDPVGEDRVESLLEQIRETLFDVRRAVGDFKAMRDLMHRAVAE LAATPGVTSEEGRQEDLAFLRWLEDDNFVFLGARVYEYPRSSDGGYAAEEPLYEAEASLG VLRDSSRSVLRRAYEPAILSKQLQRQLETGAPVVVAKSNLRSRVHRRGFMDYVGVRRYGD DGKPSGEVRFVGLFTAEAYETPAVEVPLIRHRVARIMRRAAKAPGSHNEKRLRNILETWP RDELFQTSEDTLLSMALGVLHLIDRPRVRLFARLDPFDRFASVLVYIPRERFDTEVCARA GAILADAYDGKVLEYYPEISDAPLARAHFIIEVTPGDHPDPDLSQVEARIADTALTWEDR FEAVVRAGGAPTGGVRTLLDKYGYAFPPGYRDQYDALEALADIDIIETLTEGALPRVRAF RRFEDGPRTFRFKLYLRGAAAPLAEVLPILERMGLKALIEDGFRLSIHEKDGPHSVWVHE FVLDDPAGEHIVFDEVRQVFEEAFIAIWTGATENDGFNRIVLEMAVGWREAALLRALARY RQQSGLDPSQQVQEAALRDHPMVARLILDLFRVKFDPAIRADLRTRREQAEAVQFSIVEA LQAVESLDADRVLRRLAALVGAIQRTNFYQLGADGEPKSYISFKIASRELEDLPAPKPYR EIYVSAPHVEGVHLRFGPVARGGLRWSDRRDDFRTEVLGLVKAQQVKNAVIVPVGSKGGF YPKQLPRGGDRDAIQAEAIRAYKTFLSGLLDLTDNIDSDNQVVPPPSVIAHDAQDPYLVV AADKGTATFSDIANGVAESYGFWLGDAFASGGSVGYDHKVMGITARGAWEAVKRHFRELG KDIQTEAFTVVGVGDMSGDVFGNGMLLSKQTKLLAAFDHRHIFLDPNPDPAVSWAERDRM FKLPRSSWEDYDKSKISAGGGVFARSLKSIPLSAEVRAMLEIKAEAVSPAELMTAILKSK AELLYLGGIGTYVKAKGETNADAGDKANDAIRINGSDLRVKVVGEGANLGLTQAGRIEFA QAGGHINTDAIDNSAGVDSSDHEVNIKILTGILERGGQLDRESRNTLLASMTDDVAHHVL EHNYDQTLALTLLESDAVSEVDAQIRYMVNLEQRGRLDRRVEGLPTNTTLLERKAAGRGL TRPELAVLLAYGKLDLFDEIVASQSPDDPWFERTLRGYFPRALDQYADAMQKHRLKREII ATVVGNQMVNMCGPTFVSRLKAAAGADVNAVVVGFTAAREILGIDGLWDQVNGLDNKASA EGQTALYKALAYALRSLTFWLARRAQRDAANVQTLVEAYGPSVAALKALAPAILSPFEQK AVSKRVKAYVADGAPEALALSVAALQPLTTAADLVDLANASSWSVENVARLYHQVGAAFG FDRLRGAAGSFVGGDAFERLAVRRLIEDMLTEQTSITQQVLKFAANAQAGEDEAAAKAAI SSWAALRGDRPRAVKRTIEDIEQAGGGWTFAKLTIANAALRELSSAA